> ## Documentation Index
> Fetch the complete documentation index at: https://proto.evodesign.org/docs/llms.txt
> Use this file to discover all available pages before exploring further.

# GC Content

> Enforce GC content within specified range

<div class="page-hero">
  <img class="page-hero-banner" src="https://proto-bio.github.io/proto-assets/images/constraint/gc-content/hero.png" alt="GC Content" />
</div>

<p class="entity-disclaimer">This constraint is open source. Any third-party models, product names, or trademarks referenced are the property of their respective owners, and Proto is not affiliated with them.</p>

<hr class="entity-rule" />

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<a href="https://github.com/evo-design/proto-language/blob/d3b7822f74ea64747cc751a3b2ab1aa6b799ac47/proto_language/constraint/sequence_composition/gc_content_constraint.py#L58" target="_blank" class="tab-panel source-panel entity-source-panel">
  <div class="source-info">
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    <span class="source-path">evo-design/proto-language<span class="source-subpath">/proto\_language/constraint/sequence\_composition/gc\_content\_constraint.py</span></span>
  </div>

  <span class="panel-goto-btn source-goto-btn"><span><svg width="14" height="14" viewBox="0 0 24 24" fill="currentColor"><path d="M12 0C5.37 0 0 5.37 0 12c0 5.31 3.435 9.795 8.205 11.385.6.105.825-.255.825-.57 0-.285-.015-1.23-.015-2.235-3.015.555-3.795-.735-4.035-1.41-.135-.345-.72-1.41-1.23-1.695-.42-.225-1.02-.78-.015-.795.945-.015 1.62.87 1.845 1.23 1.08 1.815 2.805 1.305 3.495.99.105-.78.42-1.305.765-1.605-2.67-.3-5.46-1.335-5.46-5.925 0-1.305.465-2.385 1.23-3.225-.12-.3-.54-1.53.12-3.18 0 0 1.005-.315 3.3 1.23.96-.27 1.98-.405 3-.405s2.04.135 3 .405c2.295-1.56 3.3-1.23 3.3-1.23.66 1.65.24 2.88.12 3.18.765.84 1.23 1.905 1.23 3.225 0 4.605-2.805 5.625-5.475 5.925.435.375.81 1.095.81 2.22 0 1.605-.015 2.895-.015 3.3 0 .315.225.69.825.57A12.02 12.02 0 0024 12c0-6.63-5.37-12-12-12z" /></svg> View source</span></span>
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<div class="entity-contributors"><span class="entity-contributors-label">Constraint contributors</span><span class="entity-contributors-people"><a class="entity-contributor" href="https://github.com/dguo8412" target="_blank" rel="noopener" title="dguo8412: 3 commits"><img noZoom class="entity-contributor-avatar" src="https://avatars.githubusercontent.com/u/46211285?v=4&s=64" alt="" loading="lazy" /><span class="entity-contributor-login">dguo8412</span></a></span></div>
Enforce GC content within specified range.

This constraint function calculates the percentage of guanine (G) and cytosine
(C) nucleotides in DNA or RNA sequences and evaluates whether it falls within
a specified acceptable range. GC content is a fundamental sequence property
that affects DNA stability, melting temperature, gene expression patterns,
and technical considerations like PCR amplification efficiency.

## API Reference

<div class="api-model-section api-model-static api-config-section">
  <div class="api-model-header"><span class="api-model-badge api-config-badge">Config</span><span class="api-model-name">GCContentConfig</span><a href="https://github.com/evo-design/proto-language/blob/d3b7822f74ea64747cc751a3b2ab1aa6b799ac47/proto_language/constraint/sequence_composition/gc_content_constraint.py#L14" target="_blank" class="func-table-btn func-source-btn api-model-source"><svg width="12" height="12" viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="2" stroke-linecap="round" stroke-linejoin="round"><polyline points="16 18 22 12 16 6" /><polyline points="8 6 2 12 8 18" /></svg> Source</a></div>

  Configuration for GC content constraint.

  This class defines configuration parameters for evaluating the GC content
  in DNA or RNA sequences. This penalty scales linearly with deviation from the
  acceptable range.

  <ParamField path="min_gc" type="number" required>
    Minimum acceptable GC content percentage (0-100)
  </ParamField>

  <ParamField path="max_gc" type="number" required>
    Maximum acceptable GC content percentage (0-100)
  </ParamField>
</div>

<div class="api-model-section api-model-static api-output-section">
  <div class="api-model-header"><span class="api-model-badge api-output-badge">Returns</span><span class="api-model-name">ConstraintOutput</span></div>

  One result per sequence. A score of 0.0 indicates
  GC content is within the acceptable range \[min\_gc, max\_gc]. Higher
  scores indicate greater deviation from the acceptable range, with
  penalties scaling linearly with the deviation distance. The `metadata`
  field carries `gc_content`.
</div>

## Usage

Evaluating GC content constraint:

```python python icon="python" theme={null}
>>> seq = Sequence("ATCGATCG", "dna")
>>> cfg = GCContentConfig(min_gc=40.0, max_gc=60.0)
>>> result = gc_content_constraint([(seq,)], config=cfg)
>>> print(result[0].score)  # 0.0 (50% GC content is within acceptable range)
```

## Metadata

| Property        | Value                   |
| --------------- | ----------------------- |
| Key             | `gc-content`            |
| Function        | `gc_content_constraint` |
| Category        | `sequence_composition`  |
| Mode            | `discrete`              |
| Uses GPU        | `False`                 |
| Supported Types | `dna`, `rna`            |
