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  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/proteinmpnn</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/random-nucleotide</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/rfdiffusion-mpnn-binder</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/semigreedy-mutation</loc>
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  <url>
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    <loc>https://proto.evodesign.org/docs/language/guides/examples/cas9-rejection-sampling</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/epigenomic-morse</loc>
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  <url>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/intron-design</loc>
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    <loc>https://proto.evodesign.org/docs/language/guides/examples/intron-design-alphagenome</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/k562-specificity</loc>
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    <loc>https://proto.evodesign.org/docs/language/guides/examples/multi-stage-optimization</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/protein-hunter</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/proteinmpnn-ensemble</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/symmetric-proteins</loc>
    <lastmod>2026-06-19T20:09:33.646Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/using-constraints</loc>
    <lastmod>2026-06-19T20:09:33.644Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/using-generators</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/using-optimizers</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/installation</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/introduction</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/beam-search</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/cycling</loc>
    <lastmod>2026-07-30T19:39:17.427Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/genetic-algorithm</loc>
    <lastmod>2026-07-30T19:39:17.409Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/gradient</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/mcmc</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/rejection-sampling</loc>
    <lastmod>2026-07-30T19:39:17.426Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/quickstart</loc>
    <lastmod>2026-07-26T23:33:03.967Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/mcp/functions</loc>
    <lastmod>2026-08-07T06:20:57.120Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/mcp/installation</loc>
    <lastmod>2026-08-07T06:20:57.121Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/mcp/introduction</loc>
    <lastmod>2026-08-07T06:20:57.123Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/mcp/modal</loc>
    <lastmod>2026-08-05T17:37:16.397Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/bindcraft</loc>
    <lastmod>2026-07-30T19:39:10.710Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/freebindcraft</loc>
    <lastmod>2026-07-30T19:39:10.718Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/germinal</loc>
    <lastmod>2026-07-30T19:39:10.709Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/overview</loc>
    <lastmod>2026-07-26T23:33:03.969Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/causal-models/evo1</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/causal-models/evo2</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/causal-models/overview</loc>
    <lastmod>2026-07-26T23:33:03.975Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/causal-models/progen2</loc>
    <lastmod>2026-07-30T19:39:10.752Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/causal-models/progen3</loc>
    <lastmod>2026-07-30T19:39:10.748Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/concepts/entities</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/concepts/overview</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/alphafold-db</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/alphamissense-db</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/ccd-lookup</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/ensembl</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/interproscan</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/ncbi</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/pdb</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/pubchem</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/sequence-fetch</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/uniprot</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/crispr-tracr-rna</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/meme</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/minced</loc>
    <lastmod>2026-07-30T19:39:10.699Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/miranda</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/overview</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/promoter-calculator</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/pyhmmer</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/cloud-inference</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/device-management</loc>
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    <loc>https://proto.evodesign.org/docs/tools/guides/parallel-execution</loc>
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    <loc>https://proto.evodesign.org/docs/tools/inverse-folding/ligandmpnn</loc>
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    <loc>https://proto.evodesign.org/docs/tools/inverse-folding/proteinmpnn</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/masked-models/ablang</loc>
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    <loc>https://proto.evodesign.org/docs/tools/masked-models/esm2</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/masked-models/esm3</loc>
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    <loc>https://proto.evodesign.org/docs/tools/masked-models/esmc</loc>
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    <loc>https://proto.evodesign.org/docs/tools/orf-prediction/orfipy</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/orf-prediction/overview</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/orf-prediction/prodigal</loc>
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    <loc>https://proto.evodesign.org/docs/tools/organizations/arc-institute</loc>
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    <loc>https://proto.evodesign.org/docs/tools/organizations/biohub</loc>
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    <loc>https://proto.evodesign.org/docs/tools/organizations/boltz</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/columbia-university</loc>
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  <url>
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    <loc>https://proto.evodesign.org/docs/tools/organizations/embl-ebi</loc>
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    <loc>https://proto.evodesign.org/docs/tools/organizations/forli-lab</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/google-deepmind</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/institute-for-protein-design</loc>
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    <loc>https://proto.evodesign.org/docs/tools/organizations/meta-ai</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/mit-jameel-clinic</loc>
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    <loc>https://proto.evodesign.org/docs/tools/organizations/pir</loc>
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    <loc>https://proto.evodesign.org/docs/tools/organizations/profluent</loc>
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