<?xml version="1.0" encoding="UTF-8"?>
<urlset xmlns="http://www.sitemaps.org/schemas/sitemap/0.9" xmlns:news="http://www.google.com/schemas/sitemap-news/0.9" xmlns:xhtml="http://www.w3.org/1999/xhtml" xmlns:image="http://www.google.com/schemas/sitemap-image/1.1" xmlns:video="http://www.google.com/schemas/sitemap-video/1.1">
    
  <url>
    <loc>https://proto.evodesign.org/docs/changelog</loc>
    <lastmod>2026-10-06T04:34:30.378Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/introduction</loc>
    <lastmod>2026-10-24T05:25:40.367Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/concepts/constraints</loc>
    <lastmod>2026-10-24T05:25:40.364Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/concepts/constructs</loc>
    <lastmod>2026-06-09T17:18:23.086Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/concepts/generators</loc>
    <lastmod>2026-10-24T05:25:40.360Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/concepts/optimizers</loc>
    <lastmod>2026-07-25T21:45:59.199Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/concepts/overview</loc>
    <lastmod>2026-06-09T17:18:23.089Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/concepts/programs</loc>
    <lastmod>2026-06-09T17:18:23.090Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/concepts/segments</loc>
    <lastmod>2026-06-09T17:18:23.090Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/concepts/sequences</loc>
    <lastmod>2026-06-09T17:18:23.091Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/concepts/tools</loc>
    <lastmod>2026-06-11T22:43:41.338Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/ablang-perplexity</loc>
    <lastmod>2026-10-24T05:25:40.359Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/af3-chain-pair-prot-dna-iptm</loc>
    <lastmod>2026-10-24T05:25:40.353Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/af3-offtarget-iptm-specificity</loc>
    <lastmod>2026-10-24T05:25:40.365Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/alphagenome-interval-track</loc>
    <lastmod>2026-10-24T05:25:40.368Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/alphagenome-splice-junction</loc>
    <lastmod>2026-10-24T05:25:40.355Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/alphagenome-splice-site-usage</loc>
    <lastmod>2026-10-24T05:25:40.351Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/balanced-aa</loc>
    <lastmod>2026-10-24T05:25:40.358Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/boltz2-binding-strength</loc>
    <lastmod>2026-10-24T05:25:40.357Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/borzoi-chromatin-accessibility-morse</loc>
    <lastmod>2026-10-24T05:25:40.352Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/borzoi-track-activity</loc>
    <lastmod>2026-10-24T05:25:40.354Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/codon-adaptation-index</loc>
    <lastmod>2026-10-24T05:25:40.351Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/codonfm-fitness</loc>
    <lastmod>2026-10-24T05:25:40.354Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/consensus-operator-specificity</loc>
    <lastmod>2026-10-24T05:25:40.353Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/crispr-array</loc>
    <lastmod>2026-10-24T05:25:40.360Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/crispr-tracr-rna</loc>
    <lastmod>2026-10-24T05:25:40.362Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/dbp-design-metrics</loc>
    <lastmod>2026-10-24T05:25:40.366Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/deeppbs-motif-specificity</loc>
    <lastmod>2026-10-24T05:25:40.366Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/dinucleotide-composition</loc>
    <lastmod>2026-10-24T05:25:39.241Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/dna-base-contact-quality</loc>
    <lastmod>2026-10-24T05:25:39.242Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/dna-motif-contact-count</loc>
    <lastmod>2026-10-24T05:25:39.234Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/dna-phosphate-contact</loc>
    <lastmod>2026-10-24T05:25:39.250Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/enformer-chromatin-accessibility-morse</loc>
    <lastmod>2026-10-24T05:25:39.232Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/esm2-perplexity</loc>
    <lastmod>2026-10-24T05:25:39.260Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/gap-gini</loc>
    <lastmod>2026-10-24T05:25:39.238Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/gc-content</loc>
    <lastmod>2026-10-24T05:25:39.229Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/gyration-radius</loc>
    <lastmod>2026-10-24T05:25:39.229Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/kmer-frequency</loc>
    <lastmod>2026-10-24T05:25:39.227Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/longest-orf-length</loc>
    <lastmod>2026-10-24T05:25:39.250Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/malinois-activity</loc>
    <lastmod>2026-10-24T05:25:39.243Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/max-homopolymer</loc>
    <lastmod>2026-10-24T05:25:39.241Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/metal3d-probability</loc>
    <lastmod>2026-10-24T05:25:39.235Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/mfe</loc>
    <lastmod>2026-10-24T05:25:39.228Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/mirna-specificity</loc>
    <lastmod>2026-10-24T05:25:39.233Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/mmseqs-gene-similarity</loc>
    <lastmod>2026-10-24T05:25:39.231Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/mpnn-perplexity</loc>
    <lastmod>2026-10-24T05:25:39.227Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/mpnn-sequence-probability</loc>
    <lastmod>2026-10-24T05:25:39.251Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/na-mpnn-motif-specificity</loc>
    <lastmod>2026-10-24T05:25:39.249Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/operator-site</loc>
    <lastmod>2026-10-24T05:25:39.238Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/overall-protein-quality</loc>
    <lastmod>2026-10-24T05:25:39.240Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/parade-utr-activity</loc>
    <lastmod>2026-10-24T05:25:39.236Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/parade-utr-specificity</loc>
    <lastmod>2026-10-24T05:25:39.242Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/parade-utr-stability</loc>
    <lastmod>2026-10-24T05:25:39.226Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/promoter-strength</loc>
    <lastmod>2026-10-24T05:25:39.251Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein-complexity</loc>
    <lastmod>2026-10-24T05:25:39.237Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein-diversity</loc>
    <lastmod>2026-10-24T05:25:39.236Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein-dna-ipsae</loc>
    <lastmod>2026-10-24T05:25:39.231Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein-domain</loc>
    <lastmod>2026-10-24T05:25:39.234Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein-globularity</loc>
    <lastmod>2026-10-24T05:25:39.225Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein-length</loc>
    <lastmod>2026-10-24T05:25:39.223Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein-max-identity</loc>
    <lastmod>2026-10-24T05:25:39.239Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein-nearest-neighbor-gap-gini</loc>
    <lastmod>2026-10-24T05:25:39.226Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein-profile-hmm</loc>
    <lastmod>2026-10-24T05:25:39.239Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein-repetitiveness</loc>
    <lastmod>2026-10-24T05:25:39.232Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein-symmetry-ring</loc>
    <lastmod>2026-10-24T05:25:39.225Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein_quality/overview</loc>
    <lastmod>2026-06-11T00:04:58.816Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/protein_structure/overview</loc>
    <lastmod>2026-07-25T21:45:57.185Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/puffin-promoter-activity</loc>
    <lastmod>2026-10-24T05:25:39.222Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/pyrosetta-interface</loc>
    <lastmod>2026-10-24T05:25:39.259Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/rna-basepair-similarity</loc>
    <lastmod>2026-10-24T05:25:39.224Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/rna-feature-similarity</loc>
    <lastmod>2026-10-24T05:25:39.235Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/rna-motif-similarity</loc>
    <lastmod>2026-10-24T05:25:39.230Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/rna-property-similarity</loc>
    <lastmod>2026-10-24T05:25:39.224Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/rna_expression/overview</loc>
    <lastmod>2026-07-30T19:39:19.859Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/rna_secondary_structure/overview</loc>
    <lastmod>2026-10-24T05:25:39.230Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/rna_splicing/overview</loc>
    <lastmod>2026-07-25T21:45:57.198Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/seq-motif</loc>
    <lastmod>2026-10-24T05:25:39.233Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/sequence-length</loc>
    <lastmod>2026-10-24T05:25:39.240Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/sequence_alignment/overview</loc>
    <lastmod>2026-06-11T00:04:58.855Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/sequence_annotation/overview</loc>
    <lastmod>2026-07-25T21:45:57.172Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/sequence_composition/overview</loc>
    <lastmod>2026-10-24T05:25:37.149Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/sequence_scoring/overview</loc>
    <lastmod>2026-10-24T05:25:37.154Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/sigma70-promoter</loc>
    <lastmod>2026-10-24T05:25:37.150Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/specific-kmer-frequency</loc>
    <lastmod>2026-10-24T05:25:37.158Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/splice-transformer-intron-boundary</loc>
    <lastmod>2026-10-24T05:25:37.153Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/splice-transformer-specificity</loc>
    <lastmod>2026-10-24T05:25:37.159Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-beta-strand</loc>
    <lastmod>2026-10-24T05:25:37.147Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-composite</loc>
    <lastmod>2026-10-24T05:25:37.155Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-contact</loc>
    <lastmod>2026-10-24T05:25:37.146Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-distogram-cce</loc>
    <lastmod>2026-10-24T05:25:37.153Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-ensemble-rmsd</loc>
    <lastmod>2026-10-24T05:25:37.158Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-helix</loc>
    <lastmod>2026-10-24T05:25:37.159Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-interface-contact</loc>
    <lastmod>2026-10-24T05:25:37.152Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-ipae</loc>
    <lastmod>2026-10-24T05:25:37.148Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-iplddt</loc>
    <lastmod>2026-10-24T05:25:37.156Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-iptm</loc>
    <lastmod>2026-10-24T05:25:37.151Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-pae</loc>
    <lastmod>2026-10-24T05:25:37.166Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-plddt</loc>
    <lastmod>2026-10-24T05:25:37.155Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-ptm</loc>
    <lastmod>2026-10-24T05:25:37.147Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-radius-gyration</loc>
    <lastmod>2026-10-24T05:25:37.167Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-rmsd</loc>
    <lastmod>2026-10-24T05:25:37.165Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-termini-distance</loc>
    <lastmod>2026-10-24T05:25:37.166Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/structure-tmscore</loc>
    <lastmod>2026-10-24T05:25:37.146Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/targetscan-site</loc>
    <lastmod>2026-10-24T05:25:37.143Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/constraints/uracil-content</loc>
    <lastmod>2026-10-24T05:25:37.143Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/autoregressive/overview</loc>
    <lastmod>2026-06-11T00:04:58.951Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/codonfm</loc>
    <lastmod>2026-10-24T05:25:37.145Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/esm2</loc>
    <lastmod>2026-10-24T05:25:37.151Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/esm3</loc>
    <lastmod>2026-10-24T05:25:37.144Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/evo1</loc>
    <lastmod>2026-10-24T05:25:37.142Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/evo2</loc>
    <lastmod>2026-10-24T05:25:37.137Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/fampnn</loc>
    <lastmod>2026-10-24T05:25:37.140Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/freebindcraft</loc>
    <lastmod>2026-10-24T05:25:37.160Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/gradient/overview</loc>
    <lastmod>2026-06-11T00:04:58.979Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/inverse_folding/overview</loc>
    <lastmod>2026-07-25T21:45:54.253Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/ligandmpnn</loc>
    <lastmod>2026-10-24T05:25:37.139Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/mpnn-mutation</loc>
    <lastmod>2026-10-24T05:25:37.157Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/msa</loc>
    <lastmod>2026-10-24T05:25:37.138Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/mutation/overview</loc>
    <lastmod>2026-10-24T05:25:37.160Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/position-weight</loc>
    <lastmod>2026-10-24T05:25:37.149Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/progen2</loc>
    <lastmod>2026-10-24T05:25:37.140Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/proteinmpnn</loc>
    <lastmod>2026-10-24T05:25:37.141Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/random-nucleotide</loc>
    <lastmod>2026-10-24T05:25:37.154Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/random-protein</loc>
    <lastmod>2026-10-24T05:25:37.137Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/rfdiffusion-mpnn-binder</loc>
    <lastmod>2026-10-24T05:25:37.150Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/semigreedy-mutation</loc>
    <lastmod>2026-10-24T05:25:37.161Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/binder-design</loc>
    <lastmod>2026-06-19T20:09:32.620Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/cas9-rejection-sampling</loc>
    <lastmod>2026-06-19T20:09:32.623Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/dna-optimization</loc>
    <lastmod>2026-06-19T20:09:32.642Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/epigenomic-morse</loc>
    <lastmod>2026-06-19T20:09:32.623Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/germinal-pdl1</loc>
    <lastmod>2026-06-19T20:09:32.622Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/gradient-protein-hallucination</loc>
    <lastmod>2026-06-19T20:09:32.640Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/intron-design</loc>
    <lastmod>2026-06-19T20:09:32.621Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/intron-design-alphagenome</loc>
    <lastmod>2026-06-19T20:09:32.626Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/k562-specificity</loc>
    <lastmod>2026-06-19T20:09:32.642Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/multi-stage-optimization</loc>
    <lastmod>2026-06-19T20:09:33.645Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/protein-hunter</loc>
    <lastmod>2026-06-19T20:09:33.648Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/proteinmpnn-ensemble</loc>
    <lastmod>2026-06-19T20:09:33.648Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/symmetric-proteins</loc>
    <lastmod>2026-06-19T20:09:33.646Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/using-constraints</loc>
    <lastmod>2026-08-11T22:08:19.238Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/using-generators</loc>
    <lastmod>2026-06-19T20:09:33.647Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/using-optimizers</loc>
    <lastmod>2026-06-19T20:09:33.646Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/installation</loc>
    <lastmod>2026-06-19T20:09:33.645Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/introduction</loc>
    <lastmod>2026-10-24T05:25:35.319Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/beam-search</loc>
    <lastmod>2026-10-24T05:25:35.306Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/cycling</loc>
    <lastmod>2026-10-24T05:25:35.305Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/genetic-algorithm</loc>
    <lastmod>2026-10-24T05:25:35.304Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/gradient</loc>
    <lastmod>2026-10-24T05:25:35.304Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/mcmc</loc>
    <lastmod>2026-10-24T05:25:35.306Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/rejection-sampling</loc>
    <lastmod>2026-10-24T05:25:35.312Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/language/quickstart</loc>
    <lastmod>2026-07-26T23:33:03.967Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/mcp/functions</loc>
    <lastmod>2026-10-06T04:34:30.382Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/mcp/installation</loc>
    <lastmod>2026-10-23T23:47:44.685Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/mcp/introduction</loc>
    <lastmod>2026-09-06T19:59:26.252Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/bindcraft</loc>
    <lastmod>2026-10-24T05:25:35.307Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/freebindcraft</loc>
    <lastmod>2026-10-24T05:25:35.317Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/germinal</loc>
    <lastmod>2026-10-24T05:25:35.302Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/overview</loc>
    <lastmod>2026-07-26T23:33:03.969Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/causal-models/evo1</loc>
    <lastmod>2026-10-24T05:25:35.311Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/causal-models/evo2</loc>
    <lastmod>2026-10-24T05:25:35.312Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/causal-models/overview</loc>
    <lastmod>2026-07-26T23:33:03.975Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/causal-models/progen2</loc>
    <lastmod>2026-10-24T05:25:35.313Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/causal-models/progen3</loc>
    <lastmod>2026-10-24T05:25:35.300Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/concepts/entities</loc>
    <lastmod>2026-08-05T17:37:14.910Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/concepts/overview</loc>
    <lastmod>2026-08-05T17:37:14.908Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/alphafold-db</loc>
    <lastmod>2026-10-24T05:25:35.318Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/alphamissense-db</loc>
    <lastmod>2026-10-24T05:25:35.303Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/ccd-lookup</loc>
    <lastmod>2026-10-24T05:25:35.318Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/ensembl</loc>
    <lastmod>2026-10-24T05:25:35.301Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/interproscan</loc>
    <lastmod>2026-10-24T05:25:35.302Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/ncbi</loc>
    <lastmod>2026-10-24T05:25:35.299Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/overview</loc>
    <lastmod>2026-10-06T04:12:21.528Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/pdb</loc>
    <lastmod>2026-10-24T05:25:35.300Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/pubchem</loc>
    <lastmod>2026-10-24T05:25:35.309Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/rfam</loc>
    <lastmod>2026-10-24T05:25:35.307Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/sequence-fetch</loc>
    <lastmod>2026-10-24T05:25:35.309Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/uniprot</loc>
    <lastmod>2026-10-24T05:25:35.305Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/epitope-prediction/netmhcpan</loc>
    <lastmod>2026-10-24T05:25:35.315Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/epitope-prediction/overview</loc>
    <lastmod>2026-10-24T05:25:32.371Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/crispr-tracr-rna</loc>
    <lastmod>2026-10-24T05:25:32.367Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/meme</loc>
    <lastmod>2026-10-24T05:25:32.359Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/minced</loc>
    <lastmod>2026-10-24T05:25:32.530Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/miranda</loc>
    <lastmod>2026-10-24T05:25:32.357Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/overview</loc>
    <lastmod>2026-08-12T01:52:00.642Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/promoter-calculator</loc>
    <lastmod>2026-10-24T05:25:32.365Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/pyhmmer</loc>
    <lastmod>2026-10-24T05:25:32.548Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/cloud-inference</loc>
    <lastmod>2026-08-05T17:37:14.911Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/device-management</loc>
    <lastmod>2026-06-19T20:09:33.649Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/parallel-execution</loc>
    <lastmod>2026-08-12T01:52:00.635Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/quickstart</loc>
    <lastmod>2026-08-05T17:37:14.915Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/storage</loc>
    <lastmod>2026-10-06T04:12:21.489Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/testing</loc>
    <lastmod>2026-06-20T00:30:00.977Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/tool-environments</loc>
    <lastmod>2026-08-12T01:52:00.651Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/tool-persistence</loc>
    <lastmod>2026-08-12T01:52:00.632Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/installation</loc>
    <lastmod>2026-10-13T21:19:42.135Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/introduction</loc>
    <lastmod>2026-10-24T05:25:32.621Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/inverse-folding/caliby</loc>
    <lastmod>2026-10-24T05:25:32.363Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/inverse-folding/esm-if1</loc>
    <lastmod>2026-10-24T05:25:32.542Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/inverse-folding/fampnn</loc>
    <lastmod>2026-10-24T05:25:32.352Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/inverse-folding/ligandmpnn</loc>
    <lastmod>2026-10-24T05:25:32.368Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/inverse-folding/overview</loc>
    <lastmod>2026-10-24T05:25:32.360Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/inverse-folding/proteinmpnn</loc>
    <lastmod>2026-10-24T05:25:32.348Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/masked-models/ablang</loc>
    <lastmod>2026-10-24T05:25:32.350Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/masked-models/codonfm</loc>
    <lastmod>2026-10-24T05:25:32.349Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/masked-models/esm2</loc>
    <lastmod>2026-10-24T05:25:32.361Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/masked-models/esm3</loc>
    <lastmod>2026-10-24T05:25:32.348Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/masked-models/esmc</loc>
    <lastmod>2026-10-24T05:25:32.355Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/masked-models/glm2</loc>
    <lastmod>2026-10-24T05:25:32.370Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/masked-models/minerva</loc>
    <lastmod>2026-10-24T05:25:32.353Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/masked-models/overview</loc>
    <lastmod>2026-10-06T04:12:21.503Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/modal-integration</loc>
    <lastmod>2026-09-06T15:30:41.533Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/molecular-docking/overview</loc>
    <lastmod>2026-08-11T18:06:14.278Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/molecular-docking/vina</loc>
    <lastmod>2026-10-24T05:25:32.347Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/mutagenesis/overview</loc>
    <lastmod>2026-07-26T23:33:01.174Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/mutagenesis/random-nucleotide</loc>
    <lastmod>2026-10-24T05:25:32.346Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/mutagenesis/random-protein</loc>
    <lastmod>2026-10-24T05:25:32.349Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/orf-prediction/orfipy</loc>
    <lastmod>2026-10-24T05:25:32.536Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/orf-prediction/overview</loc>
    <lastmod>2026-06-08T00:34:55.733Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/orf-prediction/prodigal</loc>
    <lastmod>2026-10-24T05:25:32.364Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/arc-institute</loc>
    <lastmod>2026-10-24T05:25:32.354Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/aureka-ai-research</loc>
    <lastmod>2026-10-24T05:25:32.367Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/autosome-org</loc>
    <lastmod>2026-10-24T05:25:32.371Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/biohub</loc>
    <lastmod>2026-10-24T05:25:32.372Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/boltz</loc>
    <lastmod>2026-10-24T05:25:32.363Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/broad-institute</loc>
    <lastmod>2026-10-24T05:25:32.355Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/bytedance</loc>
    <lastmod>2026-10-24T05:25:32.356Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/calico</loc>
    <lastmod>2026-10-24T05:25:32.362Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/chai-discovery</loc>
    <lastmod>2026-10-24T05:25:32.366Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/columbia-university</loc>
    <lastmod>2026-10-24T05:25:31.795Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/dtu-health-tech-section-of-bioinformatics</loc>
    <lastmod>2026-10-24T05:25:31.828Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/dunbrack-lab</loc>
    <lastmod>2026-10-24T05:25:31.799Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/embl-ebi</loc>
    <lastmod>2026-10-24T05:25:31.801Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/forli-lab</loc>
    <lastmod>2026-10-24T05:25:31.791Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/genomic-intelligence</loc>
    <lastmod>2026-10-24T05:25:31.802Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/google-deepmind</loc>
    <lastmod>2026-10-24T05:25:31.803Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/illumina</loc>
    <lastmod>2026-10-24T05:25:31.828Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/institute-for-protein-design</loc>
    <lastmod>2026-10-24T05:25:31.803Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/libnano</loc>
    <lastmod>2026-10-24T05:25:31.804Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/memorial-sloan-kettering-cancer-center</loc>
    <lastmod>2026-10-24T05:25:31.804Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/meta-ai</loc>
    <lastmod>2026-10-24T05:25:31.794Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/microsoft-research</loc>
    <lastmod>2026-10-24T05:25:31.798Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/mit-jameel-clinic</loc>
    <lastmod>2026-10-24T05:25:31.789Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/ncbi</loc>
    <lastmod>2026-10-24T05:25:31.798Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/nvidia</loc>
    <lastmod>2026-10-24T05:25:31.796Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/overview</loc>
    <lastmod>2026-10-24T05:25:31.827Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/oxford-protein-informatics-group-opig</loc>
    <lastmod>2026-10-24T05:25:31.787Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/pdbe</loc>
    <lastmod>2026-10-24T05:25:31.826Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/pir</loc>
    <lastmod>2026-10-24T05:25:31.790Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/profluent</loc>
    <lastmod>2026-10-24T05:25:31.797Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/proto</loc>
    <lastmod>2026-10-24T05:25:31.800Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/rcsb</loc>
    <lastmod>2026-10-24T05:25:31.787Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/recursion</loc>
    <lastmod>2026-10-24T05:25:31.801Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/rimd</loc>
    <lastmod>2026-10-24T05:25:31.788Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/rosettacommons</loc>
    <lastmod>2026-10-24T05:25:31.800Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/rutgers-university</loc>
    <lastmod>2026-10-24T05:25:31.792Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/s-ding-lab</loc>
    <lastmod>2026-10-24T05:25:31.788Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/salesforce-research</loc>
    <lastmod>2026-10-24T05:25:31.793Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/scripps-research</loc>
    <lastmod>2026-10-24T05:25:31.796Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/sib</loc>
    <lastmod>2026-10-24T05:25:31.795Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/st-jude-children-s-research-hospital</loc>
    <lastmod>2026-10-24T05:25:31.792Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/stanford-university</loc>
    <lastmod>2026-10-24T05:25:31.786Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/steinegger-lab</loc>
    <lastmod>2026-10-24T05:25:31.782Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/tatta-bio</loc>
    <lastmod>2026-10-24T05:25:31.789Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/tbi-vienna</loc>
    <lastmod>2026-10-24T05:25:31.791Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/technical-university-of-denmark</loc>
    <lastmod>2026-10-24T05:25:31.781Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/the-jackson-laboratory</loc>
    <lastmod>2026-10-24T05:25:31.793Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/umass-chan-medical-school</loc>
    <lastmod>2026-10-24T05:25:31.786Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/university-of-california-san-diego</loc>
    <lastmod>2026-10-24T05:25:31.782Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/university-of-california-san-francisco</loc>
    <lastmod>2026-10-24T05:25:31.781Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/university-of-nevada-reno</loc>
    <lastmod>2026-10-24T05:25:31.784Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/university-of-queensland</loc>
    <lastmod>2026-10-24T05:25:31.797Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/university-of-southern-california</loc>
    <lastmod>2026-10-24T05:25:31.784Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/university-of-washington</loc>
    <lastmod>2026-10-24T05:25:31.780Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/ut-southwestern-medical-center</loc>
    <lastmod>2026-10-24T05:25:31.785Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/wwpdb</loc>
    <lastmod>2026-10-24T05:25:31.805Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/organizations/yale-university</loc>
    <lastmod>2026-10-24T05:25:31.805Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/rna-splicing/overview</loc>
    <lastmod>2026-10-24T05:25:31.783Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/rna-splicing/pangolin</loc>
    <lastmod>2026-10-24T05:25:31.780Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/rna-splicing/splice-transformer</loc>
    <lastmod>2026-10-24T05:25:26.786Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/rna-splicing/spliceai</loc>
    <lastmod>2026-10-24T05:25:26.779Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/rna-splicing/spliceai2</loc>
    <lastmod>2026-10-24T05:25:26.787Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-alignment/blast</loc>
    <lastmod>2026-10-24T05:25:26.788Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-alignment/mafft</loc>
    <lastmod>2026-10-24T05:25:26.776Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-alignment/mmseqs2</loc>
    <lastmod>2026-10-24T05:25:26.789Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-alignment/overview</loc>
    <lastmod>2026-07-26T23:32:48.204Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/alphagenome</loc>
    <lastmod>2026-10-24T05:25:26.790Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/borzoi</loc>
    <lastmod>2026-10-24T05:25:26.772Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/cherimoya</loc>
    <lastmod>2026-10-24T05:25:26.777Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/deeppbs-specificity</loc>
    <lastmod>2026-10-24T05:25:26.777Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/enformer</loc>
    <lastmod>2026-10-24T05:25:26.778Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/genomic-intelligence</loc>
    <lastmod>2026-10-24T05:25:26.789Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/malinois</loc>
    <lastmod>2026-10-24T05:25:26.779Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/na-mpnn-specificity</loc>
    <lastmod>2026-10-24T05:25:26.770Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/overview</loc>
    <lastmod>2026-10-24T05:25:26.774Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/parade</loc>
    <lastmod>2026-10-24T05:25:26.774Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/primer3</loc>
    <lastmod>2026-10-24T05:25:26.771Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/puffin</loc>
    <lastmod>2026-10-24T05:25:26.787Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/sequence-scoring/segmasker</loc>
    <lastmod>2026-10-24T05:25:26.775Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-alignment/foldmason</loc>
    <lastmod>2026-10-24T05:25:26.773Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-alignment/foldseek</loc>
    <lastmod>2026-10-24T05:25:26.784Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-alignment/overview</loc>
    <lastmod>2026-07-26T23:32:48.195Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-alignment/pymol-rmsd</loc>
    <lastmod>2026-10-24T05:25:26.778Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-alignment/tmalign</loc>
    <lastmod>2026-10-24T05:25:26.775Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-alignment/usalign</loc>
    <lastmod>2026-10-24T05:25:26.771Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-design/overview</loc>
    <lastmod>2026-07-26T23:32:48.190Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-design/rfdiffusion3</loc>
    <lastmod>2026-10-24T05:25:26.769Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-dynamics/bioemu</loc>
    <lastmod>2026-10-24T05:25:26.770Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-dynamics/overview</loc>
    <lastmod>2026-07-26T23:32:48.194Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/alphafold2</loc>
    <lastmod>2026-10-24T05:25:26.781Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/alphafold3</loc>
    <lastmod>2026-10-24T05:25:26.772Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/boltz2</loc>
    <lastmod>2026-10-24T05:25:26.766Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/chai1</loc>
    <lastmod>2026-10-24T05:25:26.782Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/esmfold</loc>
    <lastmod>2026-10-24T05:25:26.731Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/esmfold2</loc>
    <lastmod>2026-10-24T05:25:26.731Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/opendde</loc>
    <lastmod>2026-10-24T05:25:26.783Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/overview</loc>
    <lastmod>2026-07-28T04:15:36.010Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/protenix</loc>
    <lastmod>2026-10-24T05:25:26.725Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/rf3</loc>
    <lastmod>2026-10-24T05:25:26.725Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/viennarna</loc>
    <lastmod>2026-10-24T05:25:26.726Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-prediction/x3dna</loc>
    <lastmod>2026-10-24T05:25:26.729Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-scoring/dssp</loc>
    <lastmod>2026-10-24T05:25:26.726Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-scoring/ipsae</loc>
    <lastmod>2026-10-24T05:25:26.730Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-scoring/metal3d</loc>
    <lastmod>2026-10-24T05:25:26.730Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-scoring/overview</loc>
    <lastmod>2026-08-12T01:51:50.716Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-scoring/pdockq2</loc>
    <lastmod>2026-10-24T05:25:26.724Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-scoring/pyrosetta</loc>
    <lastmod>2026-10-24T05:25:26.765Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/tools/structure-scoring/structure-metrics</loc>
    <lastmod>2026-10-24T05:25:26.727Z</lastmod>
  </url>

  <url>
    <loc>https://proto.evodesign.org/docs/updates</loc>
    <lastmod>2026-09-06T19:59:23.385Z</lastmod>
  </url>
</urlset>