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    <loc>https://proto.evodesign.org/docs/language/generators/ligandmpnn</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/proteinmpnn</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/random-nucleotide</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/generators/rfdiffusion-mpnn-binder</loc>
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  <url>
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  <url>
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  <url>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/intron-design</loc>
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    <loc>https://proto.evodesign.org/docs/language/guides/examples/intron-design-alphagenome</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/k562-specificity</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/protein-hunter</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/proteinmpnn-ensemble</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/examples/symmetric-proteins</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/using-constraints</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/using-generators</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/guides/using-optimizers</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/installation</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/cycling</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/genetic-algorithm</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/gradient</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/mcmc</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/optimizers/rejection-sampling</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/language/quickstart</loc>
    <lastmod>2026-07-26T23:33:03.967Z</lastmod>
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  <url>
    <loc>https://proto.evodesign.org/docs/mcp/functions</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/mcp/installation</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/mcp/introduction</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/bindcraft</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/freebindcraft</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/germinal</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/binder-design/overview</loc>
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  <url>
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  <url>
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  <url>
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  <url>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/ccd-lookup</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/interproscan</loc>
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  <url>
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  <url>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/pubchem</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/sequence-fetch</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/database-retrieval/uniprot</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/crispr-tracr-rna</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/meme</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/minced</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/miranda</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/overview</loc>
    <lastmod>2026-08-12T01:52:00.642Z</lastmod>
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    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/promoter-calculator</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/gene-annotation/pyhmmer</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/cloud-inference</loc>
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  <url>
    <loc>https://proto.evodesign.org/docs/tools/guides/device-management</loc>
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    <loc>https://proto.evodesign.org/docs/tools/inverse-folding/ligandmpnn</loc>
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