> ## Documentation Index > Fetch the complete documentation index at: https://proto.evodesign.org/docs/llms.txt > Use this file to discover all available pages before exploring further. # Molecular Docking > Molecular Docking tools Predict how small molecules bind to macromolecular receptors and rank candidate binding poses with molecular docking search and scoring methods. * **Input:** a receptor structure, a small-molecule ligand, and a three-dimensional search region. * **Output:** ranked ligand poses, docking scores, and interoperable molecular structure files.
Scripps Research Forli Lab