> ## Documentation Index
> Fetch the complete documentation index at: https://proto.evodesign.org/docs/llms.txt
> Use this file to discover all available pages before exploring further.

# Institute for Protein Design

<div class="org-page-header">
  <img src="https://mintcdn.com/bio-pro/_UGa2jUMKeVPCbLk/assets/images/cached/6c4da2f317fc.png?fit=max&auto=format&n=_UGa2jUMKeVPCbLk&q=85&s=e0eec78648cb6cc4938f40ab18608b31" alt="Institute for Protein Design" class="org-page-logo" width="200" height="200" data-path="assets/images/cached/6c4da2f317fc.png" />

  <a href="https://www.ipd.uw.edu/" target="_blank" class="org-page-link">[https://www.ipd.uw.edu/](https://www.ipd.uw.edu/)</a>
</div>

<p class="entity-disclaimer">Proto is not affiliated with Institute for Protein Design. This page lists models and codebases developed by Institute for Protein Design that are available through the Proto tools library. Product names, logos, and trademarks are the property of their respective owners.</p>

<div class="tool-catalog-grid">
  <a href="/docs/tools/inverse-folding/ligandmpnn" class="tool-catalog-card">
    <img noZoom class="card-art" src="https://proto-bio.github.io/proto-assets/images/tool/ligandmpnn/carousel.png" alt="" loading="lazy" />

    <div class="tool-card-org-row"><span class="tool-card-org" style={{background: "#4b2e83"}} title="Institute for Protein Design"><img src="https://mintcdn.com/bio-pro/_UGa2jUMKeVPCbLk/assets/images/cached/6c4da2f317fc.png?fit=max&auto=format&n=_UGa2jUMKeVPCbLk&q=85&s=e0eec78648cb6cc4938f40ab18608b31" alt="" class="tool-card-org-logo" width="200" height="200" data-path="assets/images/cached/6c4da2f317fc.png" /> IPD</span></div>
  </a>

  <a href="/docs/tools/inverse-folding/proteinmpnn" class="tool-catalog-card">
    <img noZoom class="card-art" src="https://proto-bio.github.io/proto-assets/images/tool/proteinmpnn/carousel.png" alt="" loading="lazy" />

    <div class="tool-card-org-row"><span class="tool-card-org" style={{background: "#4b2e83"}} title="Institute for Protein Design"><img src="https://mintcdn.com/bio-pro/_UGa2jUMKeVPCbLk/assets/images/cached/6c4da2f317fc.png?fit=max&auto=format&n=_UGa2jUMKeVPCbLk&q=85&s=e0eec78648cb6cc4938f40ab18608b31" alt="" class="tool-card-org-logo" width="200" height="200" data-path="assets/images/cached/6c4da2f317fc.png" /> IPD</span></div>
  </a>

  <a href="/docs/tools/structure-design/rfdiffusion3" class="tool-catalog-card">
    <img noZoom class="card-art" src="https://proto-bio.github.io/proto-assets/images/tool/rfdiffusion3/carousel.png" alt="" loading="lazy" />

    <div class="tool-card-org-row"><span class="tool-card-org" style={{background: "#4b2e83"}} title="Institute for Protein Design"><img src="https://mintcdn.com/bio-pro/_UGa2jUMKeVPCbLk/assets/images/cached/6c4da2f317fc.png?fit=max&auto=format&n=_UGa2jUMKeVPCbLk&q=85&s=e0eec78648cb6cc4938f40ab18608b31" alt="" class="tool-card-org-logo" width="200" height="200" data-path="assets/images/cached/6c4da2f317fc.png" /> IPD</span></div>
  </a>

  <a href="/docs/tools/structure-prediction/rf3" class="tool-catalog-card">
    <img noZoom class="card-art" src="https://proto-bio.github.io/proto-assets/images/tool/rf3/carousel.png" alt="" loading="lazy" />

    <div class="tool-card-org-row"><span class="tool-card-org" style={{background: "#4b2e83"}} title="Institute for Protein Design"><img src="https://mintcdn.com/bio-pro/_UGa2jUMKeVPCbLk/assets/images/cached/6c4da2f317fc.png?fit=max&auto=format&n=_UGa2jUMKeVPCbLk&q=85&s=e0eec78648cb6cc4938f40ab18608b31" alt="" class="tool-card-org-logo" width="200" height="200" data-path="assets/images/cached/6c4da2f317fc.png" /> IPD</span></div>
  </a>
</div>