> ## Documentation Index
> Fetch the complete documentation index at: https://proto.evodesign.org/docs/llms.txt
> Use this file to discover all available pages before exploring further.

# Structure Design

> Generate novel protein backbone structures

Generate novel protein backbones with generative models. Unlike structure prediction,
which predicts the fold of an existing sequence, structure design invents new backbones
that satisfy specified constraints such as length, topology, symmetry, scaffolded motifs,
or binding sites. Designed backbones are proposals to be validated downstream.

* **Input:** design constraints such as length, topology, symmetry, scaffolded motifs, or target binding sites.
* **Output:** newly generated backbone structures that satisfy the constraints, ready for sequence design and validation.

<div class="tool-catalog-grid">
  <a href="/docs/tools/structure-design/rfdiffusion3" class="tool-catalog-card">
    <img noZoom class="card-art" src="https://proto-bio.github.io/proto-assets/images/tool/rfdiffusion3/carousel.png" alt="" loading="lazy" />

    <div class="tool-card-org-row"><span class="tool-card-org" style={{background: "#4b2e83"}} title="Institute for Protein Design"><img src="https://mintcdn.com/bio-pro/_UGa2jUMKeVPCbLk/assets/images/cached/6c4da2f317fc.png?fit=max&auto=format&n=_UGa2jUMKeVPCbLk&q=85&s=e0eec78648cb6cc4938f40ab18608b31" alt="" class="tool-card-org-logo" width="200" height="200" data-path="assets/images/cached/6c4da2f317fc.png" /> IPD</span></div>
  </a>
</div>
