Documentation Index
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Proto home page

GitHub
Design with Proto
Design with Proto

Language

Introduction
Installation
Quickstart

Language Concepts

Architecture Overview
Sequences
Segments
Constructs
Generators
Constraints
Optimizers
Programs
Tools

Language Guides

Using Constraints
Using Generators
Using Optimizers

Constraints

Generators

Optimizers

Beam Search Optimizer
Cycling Optimizer
Genetic Algorithm Optimizer
Gradient Optimizer
MCMC Optimizer
Rejection Sampling Optimizer

Inverse Folding

Inverse Folding

Inverse-folding generators design a sequence for a fixed three-dimensional backbone.

Inverse-folding generators design a sequence for a fixed three-dimensional backbone.

ProGen2 Protein Language Model

FAMPNN Inverse Folding

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