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Simple “Hello World” programs for understanding the design language.
Designs a 100 bp DNA sequence with balanced GC content and short homopolymers.
Diversifies the GB1 domain and filters for sequence quality and predicted structure confidence.
Tunes a bacterial promoter and terminator around a fixed reporter context.
Protein sequence design programs with structure-aware objectives.
Uses the Protein Hunter method to alternate structure prediction with inverse folding for monomer design.
Designs three tied protein chains and scores whether they form a confident symmetric assembly.
Uses the Germinal method to redesign a VHH binder against PD-L1 with gradient-guided and MCMC optimization stages.
Regulatory and noncoding DNA programs for controlling sequence-level function.
Uses Malinois and gradient optimization to design a 200 bp regulatory DNA insert with high K562 activity and low HepG2/SK-N-SH activity.
Optimizes a variable intron inside fixed flanking sequence for splice-site and sequence-quality constraints.
Uses Evo 2 and beam search to design synthetic DNA with a target chromatin-accessibility signal pattern.
Programs coordinating multiple genes, constructs, or linked regulatory parts.
Samples CRISPR-Cas operons and performs Cas9, CRISPR-array, and tracrRNA identification.
Diversifies a linked β-adrenergic signaling pathway from receptor activation through CREB transcriptional readout.
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