New Tools
September 2, 2026Genomic IntelligenceSeven DNA language models scoring promoters, splice sites, enhancers, chromatin, and expression.
August 5, 2026Primer3Melting temperature, hairpin and dimer stability, and GC content for a DNA oligo.
August 5, 2026CodonFMCodon-level masked language model for coding-sequence fitness, embeddings, and design.
August 4, 2026AutoDock VinaSmall-molecule docking into a rigid receptor, returning ranked poses with affinity scores.
July 24, 2026OpenDDEAll-atom co-folding for complexes of proteins, DNA, RNA, ligands, and ions.
July 23, 2026PARADECell-type-specific UTR activity and 3’ UTR mRNA stability prediction.Commit Timeline
OpenDDE was added to the structure prediction category.
Contribute
The tool catalog is extended through contributions. To add a tool, fork the repository and open a pull request; we will assist with the integration.Add a tool
Fork proto-tools and open a pull request. CONTRIBUTING.md documents the layout and conventions.
Contact us
Describe what you would like to see in Proto and how we can assist.